Welcome to the spectrum_similarity wiki!

This wiki consists of the following pages:

1.1.GUI: how to run a probabilistic based scoring function to compare two given spectra data sets

[1.2.Setting parameters of the GUI for the comparison of a cumulative binomial derived scoring function] (https://github.com/compomics/spectrum_similarity/wiki/1.2.Setting-parameters-of-the-GUI-application)

2.1.Stand-alone: how to run a probabilistic based scoring function to compare two given spectra data sets

2.2.Setting parameters for the stand alone application (MS2Similarity.properties)

3.GUI: A pairwise spectrum view