3.2. Modifications
There are two modifications: variable and fixed (See Xilmass parameters). modifications should be listed by separating semi-colon ;
on given the properties of either fixedModification
or variableModification
.
Avaliable modifications are listed below.
-
Acetylation of K
-
Acetylation of peptide N-term
-
Acetylation of protein N-term
-
Carbamidomethylation of C
-
Carbamidomethylation of E
-
Carbamidomethylation of K
-
Oxidation of M
-
Oxidation of P
-
Oxidation of K
-
Oxidation of Carbamidomethylation
-
Dioxidation of M
-
Dioxidation of W
-
Trioxidation of C
-
Phosphorylation of S
-
Phosphorylation of T
-
Phosphorylation of Y
-
Arginine 13C(6)
-
Arginine 13C(6) 15N(4)
-
Lysine 2H(4)
-
Lysine 13C(6)
-
Lysine 13C(6) 15N(2)
-
Proline 13C(5)
-
4-Hydroxyproline
-
Leucine 13C(6) 15N(1)
-
Isoleucine 13C(6) 15N(1)
-
Dimethylation of K 2H(4)
-
Dimethylation of K 2H(6)
-
Dimethylation of peptide N-term K 2H(4)
-
Dimethylation of peptide N-term 2H(6)
-
Dimethylation of peptide N-term 2H(6) 13C(2)
-
18O(2) of peptide C-term
-
18O(1) of peptide C-term
-
ICAT-O
-
ICAT-9
-
ICPL0 of K
-
ICPL0 of peptide N-term
-
ICPL4 of K
-
ICPL4 of peptide N-term
-
ICPL6 of K
-
ICPL6 of peptide N-term
-
ICPL10 of K
-
ICPL10 of peptide N-term
-
mTRAQ of K light
-
mTRAQ of peptide N-term light
-
mTRAQ of K 13C(3) 15N
-
mTRAQ of peptide N-term 13C(3) 15N
-
mTRAQ of 13C(6) 15N(2)
-
mTRAQ of peptide N-term 13C(6) 15N(2)
-
iTRAQ 4-plex of peptide N-term
-
iTRAQ 4-plex of K
-
iTRAQ 8-plex of peptide N-term
-
iTRAQ 8-plex of K
-
iTRAQ 8-plex of Y
-
TMT 2-plex of peptide N-term
-
TMT 2-plex of K
-
TMT 6-plex of peptide N-term
-
TMT 6-plex of K
-
TMT 10-plex of peptide N-term
-
TMT 10-plex of K
-
Ubiquitination of K
-
Methylation of K
-
Methylation of R
-
Methylation of E
-
Methylation of C
-
Methylation of D
-
Methylation of S
-
Dimethylation of K
-
Dimethylation of peptide N-term K
-
Dimethylation of R
-
Trimethylation of K
-
Trimethylation of R
-
Trimethylation of protein N-term A
-
Pyrolidone from E
-
Pyrolidone from Q
-
Pyrolidone from carbamidomethylated C
-
HexNAc of S
-
HexNAc of T
-
Hex(1)NAc(1) of S
-
Hex(1)NAc(1) of T
-
Hexose of K
-
Hex(5) HexNAc(4) NeuAc(2) of N
-
Hex(5) HexNAc(4) NeuAc(2) Na of N
-
SUMO-2/3 Q87R
-
Deamidation of N
-
Deamidation of Q
-
Deamidation of N 18O
-
Carbamilation of protein N-term
-
Carbamilation of K
-
Acetaldehyde +26
-
Sodium adduct to D
-
Sodium adduct to E
-
Amidation of the peptide C-term
-
Amidation of the protein C-term
-
Sulfonation of S
-
Sulfonation of T
-
Sulfonation of Y
-
Palmitoylation of C
-
Palmitoylation of K
-
Palmitoylation of S
-
Palmitoylation of T
-
Palmitoylation of protein N-term
-
Formylation of K
-
Formylation of S
-
Formylation of T
-
Formylation of peptide N-term
-
Formylation of protein N-term
-
Propionyl of K light
-
Propionyl of peptide N-term light
-
Propionyl of K heavy
-
Propionyl of peptide N-term heavy
-
Trideuterated Methyl Ester of D
-
Trideuterated Methyl Ester of E
-
Trideuterated Methyl Ester of K
-
Trideuterated Methyl Ester of R
-
Trideuterated Methyl Ester of peptide C-term
-
Carboxymethylation of C
-
Farnesylation of C
-
Geranyl-geranyl of C
-
Guanidination of K
-
Guanidination of peptide N-term
-
Homoserine of peptide C-term M
-
Homoserine lactone of peptide C-term M
-
Lipoyl of K
-
Methylthio of D
-
Methylthio of N
-
Methylthio of C
-
NIPCAM of C
-
Propionamide of C
-
Propionamide of K
-
Propionamide of peptide N-term
-
Pyridylethyl of C
-
Dehydration of S
-
Dehydration of T
-
Nethylmaleimide of C
-
Glutathione of C
-
FormylMet of protein N-term
-
Didehydro of T
-
Thioacyl of peptide N-term
-
Diiodination of Y