1.1.GUI: how to run a probabilistic based scoring function to compare two given spectra data sets

GUI application to perform the comparison of two given data sets.

1-Start the application: the GUI can be started by running a command prompt on a folder that contains scoring_pipeline-X.Y.Z.jar (X.Y.Z shows the current version number). On the command prompt, the following line needs to be executed:

java -cp scoring_pipeline-X.Y.Z.jar main.ScorePipelineStarter

startup

The GUI starts after executing this command:

GUI

2-Set the parameters: The details on the parameters can be found here.

3-Run: Click the run button to start the comparison.

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1.1.GUI: how to run a probabilistic based scoring function to compare two given spectra data sets 1.1.GUI: how to run a probabilistic based scoring function to compare two given spectra data sets 1.2.Setting parameters of the GUI application 2.1.Stand alone: how to run a probabilistic based scoring function to compare two given spectra data sets 2.1.Stand alone: how to run a probabilistic based scoring function to compare two given spectra data sets 2.2.Setting parameters of the stand alone application (MS2Similarity.properties) 3.GUI: a pairwise spectrum view 3.GUI: a pairwise spectrum view Home
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