Home

logo

Welcome to the xilmass wiki!

Xilmass is open-source and freely available under the permissive Apache2 license. Xilmass is platform free, therefore works on Windows, Linux and OS-X operating systems. Xilmass is implemented in Java and therefore, make sure that [JDK] (http://www.oracle.com/technetwork/java/javase/downloads/index.html) is already installed on your computer environment. The current program works as a standalone version which can be run by following the steps described underneath, as well as GUI.

This wiki consists of the following page:

1. Start up Xilmass: How to run Xilmass

2. Instructions to run a graphical user-interface (GUI) version for the identification of cross linked peptides

3. Instructions to run a command line (CLI) version for the identification of cross linked peptides

3.1. Xilmass parameters CLI

[3.2. Modifications] (https://github.com/compomics/xilmass/wiki/3.2.-Modifications)

4. Visualizing the Xilmass peptides-to-spectrum matches

5. Database

Links
Project home Source Issues
Wiki
1. Start up Xilmass 2. Instructions to run GUI for the identification of cross linked peptides 3. Instructions to run CLI for the identification of cross linked peptides 3.1. Xilmass parameters CLI 3.2. Modifications 4. Visualizing the Xilmass peptides to spectrum matches 5. Database Home
Projects
DeepLC ThermoRawFileParser ThermoRawFileParserGUI colims compomics-utilities dbtoolkit denovogui fragmentation-analyzer iceLogo jsparklines jtraml mappi-dat mascotdatfile meta-proteome-analyzer moff ms-lims ms2pip_c ms2rescore omssa-parser pepshell peptide-shaker pladipus pride-asa-pipeline reporter search-all-assess-subset searchgui spectrum_similarity thermo-msf-parser xilmass xtandem-parser