Pladipus-MsConvert
Pladipus-MsConvert is a module to facilitate the conversion of RAW files to other formats. Currently, this step is exclusive to the Windows operating systems.
Note that the discussed parameters are the ones mandatory for pladipus execution. For more detailed parameters, please refer to the respective pages.
1. MsConvertSetupStep
This step preprocesses the input data in order to prepare the worker to convert a RAW file into another spectrum format.
The following parameters are required:
| Parameter | Meaning |
|---|---|
| f | input file (.raw) |
| o | output folder |
2. MsConvertStep
This step manages the execution of MsConvert’s command line. It requires the following parameters (next to the ones specified by the MsConvert command line).
| Parameter | Meaning |
|---|---|
| f | input file (.raw) |
| o | output folder |
| pwiz_folder | the ProteoWizard folder (selected at installation) |
| -filter | the optional filters for the conversion |